PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00391.1_g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 560aa    MW: 63852.3 Da    PI: 5.0919
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00391.1_g00010.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-12308351755
                              HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +ErrRR+++N+++  Lr+l+P       +Kl+ a+iL  A++Y+k+Lq
  Rsa1.0_00391.1_g00010.1 308 HAERRRRKKLNDRLYALRSLVPRI-----TKLDRASILGDAINYVKELQ 351
                              68*********************7.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-196144IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.19E-14300353No hitNo description
PROSITE profilePS5088816.247301350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-17303366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-16307356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-10308351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-16309364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    Send to blast
MQNLLEKLRP LVGARAWDYC VLWRLNEDQR FLKWIGCCCG GTLLIEENET EEFSFGGCRD  60
VMFHHLRTKS CEFLAHLPSS IPLDSGIYAE TLLTNQTGWL TESSEPGFMQ ETICTRVLVP  120
VAGGLVELFA TRHVAEDQNV VDFVMGHCNM LLDETVTIKM MLADEVESKP YGMLPGEIHQ  180
KCSSKDEEMI MNLPSPYDIS ADQIRLNFLP QMNDYESQHL KMKSGYDHHQ NLGPYLPENG  240
NNMNPFNTVG EEGVGEPSLL VKDQQVANDK EMNHENATGS ECSDQIDDED DPKCKKKTGK  300
HTQAKNLHAE RRRRKKLNDR LYALRSLVPR ITKLDRASIL GDAINYVKEL QNEAKELQDE  360
LEENSETEDG SNRQQGGMSL NKTVLTGFHQ GLSCNSNLPE MKQDVDLENC NDKGQEMEPQ  420
VDVAQLDGRE FFVKVICEYK PGGFTRLMEA LDSLGLEVTN ANTTRFLSLV SNVFKVEKND  480
SEMVPAEHVR NSLLEITRNT SRGWHDDQMA TGSMQNEKNE VDYQHYDDHH HHGGHHQLHD  540
HQMNQSAHHH HQHINHYQNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294315KKKTGKHTQAKNLHAERRRRKK
2309316ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5119910.0AJ511991.1 Brassica napus mRNA for bHLH transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001302958.10.0transcription factor ABORTED MICROSPORES-like
SwissprotQ9ZVX20.0AMS_ARATH; Transcription factor ABORTED MICROSPORES
TrEMBLQ84WX10.0Q84WX1_BRANA; BHLH transcription factor
STRINGBra013041.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75892741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.10.0bHLH family protein